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Let's say I am looking to find all articles (or books) related to one particular diptera species. Where should I look besides in the results of the common search engines like Google? Maybe there are literature databases or other sites not covered by Google ...

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let's say. :D try this one: http://darwin.zoo...e/ispecies/ :D

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Google Scholar is worth a try as well, produces a different set of results compared to a standard Google search:
http://scholar.go...

Martin